The Xenon cutscene, Root Abyss PV, Cygnus Awakening cutscene, and Beast Tamer MV were all produced by Madhouse. Unsure of which studio is in charge of the latest batch of Actually Decent (Mesoranger X/Arcana/Mechanical Hearts/more?) Maplestory animation.

I've been trying to track it down. The rest of the maplestory1 commercials(the ones that aren't animated as good) were made by Studio animal, a korean studio http://www.studioanimal.co.kr/. You can see it on their portfolio

edit: I don't speak jp or kr so it's hard to research, but it's possible Madhouse's SK subsidiary DRMovie made some of these later ones. As Nexon is listed as a domestic client http://drmovie.biz/?page_id=136.

edit 2: It seems they did not, but they did make the ones you mentioned.

Oops, I've been meaning to delete that comment for a while now. But yeah it was DR movie for a while before they switched to Studio Ppuri, which has excellent animation but is absolutely cursed in the photography and background department. The complete opposite of Animal.
Iirc, it was assumed that Madhouse had worked on it due to a picture of a storyboard that exists on the internet somewhere.